species:   Clros
pid:       PID1838
parent:    cro-mir-4
paralog:   
locus:     CADEHS020000005.2:590451-590536
matures:   ['UCAGCCUCGAGACUUUGCC', 'CAAAGUCUCGAGGCUAAG']
srr:       ERR5950923
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram CADEHS020000005.2:590451-590536

123 out of bounds
1715 alignments
222 proper strand
190 stranded perfect matches

*******************                                              ******************** 
UCAGCCUCGAGACUUUGCCGGAUAGCUUUGUUUUCUUUACGGCGAAAAAGAAAAAGAAUAUAUCCUGCAAAGUCUCGAGGCUAAGC
..((((((((((((((((.(((((..(((.((((((((........)))))))).)))..))))).))))))))))))))))....
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=146 c
-------------------------------------------------------------------CAAAGUCUCGAGGCUAAG- l=18 a=0 c*
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=146 ma
-------------------------------------------------------------------CAAAGUCUCGAGGCUAAG- l=18 a=0 ma*

-----------------------------------------------------------------UGCAAAGUCUCGAGGCUAAG- l=20 a=1 
----------------------------------------------------------------CUGCAAAGUCUC---------- l=12 a=1 
----------------------------------------------------------------CUGCAAAGaCUCGAGGCUAAGC l=22 a=1 
----------------------------------------------------------------CUGCAAAGUCUCGAGGCUAAGC l=22 a=1 
----------------------------------------------------------UAUAUCCUGCAAAGUCUCGA-------- l=20 a=2 
----------------------------------------------------------UAUAUCCUGCAAAGUCUCGAGGC----- l=23 a=1 
-----CUCGAGACUUUGCCGGAUAGC------------------------------------------------------------ l=21 a=1 
-----CUCGAGACUUUGCCGGAUAGCg----------------------------------------------------------- l=22 a=1 
-CAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=18 a=5 
-uAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=18 a=1 
-CAGCCUCGAGACUUUGCCGaA---------------------------------------------------------------- l=21 a=2 
UCAGCCUCGAGACUUUGC-------------------------------------------------------------------- l=18 a=20 
UCAGCCUCGAGACUUUGa-------------------------------------------------------------------- l=18 a=2 
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=146 (c,ma)
UuAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=25 
UCAGCCUCGAGACUUUGCCG------------------------------------------------------------------ l=20 a=11 
UCAGCCUCGAGACUUUGCCGGA---------------------------------------------------------------- l=22 a=1 

mb-01011
ax-1011001
ku-11
ss-101011011100
fn-101
